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APAF has recently added Difference Gel Electrophoresis (DIGE) to our available proteomics services. DIGE allows researchers to focus only on proteins of relevance whilst simultaneously removing gel to gel variation by the incorporation of an internal standard for every gel spot.
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APAF - Qiagen* ARC Linkage Project (LP0455692)

"Deep-Drilling of the Human Plasma Proteome"

Dr Amit Kapur and Professor Mark Baker

Plasma is a biomarker discovery opportunity because it is easily available and because it comprehensively and regularly samples the human condition and in all states of health and/or disease.  Drilling deeply into the human plasma/serum proteome with state-of-the-art technologies holds enormous promise in developing new markers for disease prognosis, diagnosis, response to therapy monitoring and stratification of patients - if some critical technical challenges are overcome.

Unfortunately, like many protein-rich biofluids (saliva, tears, urine, skin, hair, etc) plasma has an extraordinary protein concentration range.  There is a 1012 difference between the concentration of the most abundant (albumin; ~60mg/mL) and rare abundance proteins.  The top 20 proteins occupy the vast major of discovery space.   While estimates vary, there is consensus that the 400-500 proteins reported in plasma to date are but the tip of the iceberg and that great discovery opportunities exist if we can "drill far more deeply into the human plasma proteome".  Without removal of these abundant proteins visualization of the low abundance (i.e., rare) proteins is just not feasible.

The aim of this project is to investigate a novel cyclic immunodepletion technique for the removal of the high abundant proteins for human plasma using IgY antibodies.  If successful this will enable the extension of the utility of current proteomic technologies to low abundant protein markers present in plasma and subsequent opportunities for research and development of new biomarkers.  If successful the researchers believe the outcome could lead to a renaissance in the discovery, evaluation and deployment of novel clinical diagnostics and further enhance Australia's reputation for research excellence in Proteomics.

*QIAGEN GmbH
QIAGEN Strasse 1
40724 Hilden
Tel: 02103-29-12000
Fax: 02103-29-22000

     
 
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